PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 301aa    MW: 33209 Da    PI: 6.4414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025459.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-1499150155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Do025459.1  99 QRITHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 150
                 799***************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-1497154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-1597154No hitNo description
PROSITE profilePS5088816.1298149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1898169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALLDAVVYP QPQGHFGYGH RDASYGLPWS DATGFSEWDP FLLASLVQNA EEFGEEVGSK  60
SSPDHDAAPS AVDPSPVTTT KRKRRRAKVV KNEEEIESQR ITHIAVERNR RRQMNEYLAV  120
LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQSLEVQR SLKEHNHNSS NPFAGFFSFP  180
QYSTTSASHG GAGNHTTKEE ASDRSPQSSW ITADIEASMV DGHTSVKVQA RRRPRQLLRL  240
AAGLQQLGLT TLHLNVSTAG TMVMYSFSLK VEDECKLSSV EEIAAAVHDI LGRVQEEAGF  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KRKRRR
28185RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLK4AIE11e-168K4AIE1_SETIT; Uncharacterized protein
STRINGSi038653m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-52bHLH family protein